1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttcctaaaccaagacttatccgaggtttaggcaatgcaacttccaattttttctgtgttattattaacaccgatctctgatattgtgtgcagGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGCATATTAGCAGAGGAGACAATTTGGGAATT
species | Arabidopsis thaliana |
transcript | AT4G26570.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAA GGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGAEST: gi|125198700|gb|EL213654.1|EL213654
genomic: GTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAgtgagttcct ... ttgtgtgcagGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGA
EST: TTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAA GGATATAACAACTACATEST: gi|124906335|gb|EH980415.1|EH980415
genomic: -TTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAgtgagttcct ... ttgtgtgcagGGATATAACAACTACAT
EST: CATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAA GGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGA
genomic: CATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAgtgagttcct ... ttgtgtgcagGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGA
aacttccaattttttctgtgttattattaacaccgatctctgatattgtgtgcagGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGCATATTAGCAGAGGAGACAATTTGGGAATT
aattttttctgtgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctaaaccaagacttatccgaggtttaggcaatgcaacttccaattttttctgtgttattattaacaccgatctctgatattgtgtgcagGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGCATATTAGCAGAGGAGACAATTTGGGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA