Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgatatatcaatctcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcagATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG

Basic information

species Arabidopsis thaliana
transcript AT4G26510.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 8
------gtaattgatatatcaatc---tcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaat-----tgatttctctt--gcagATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG-
      | |||| ||  | |  |    | ||||   |  ||    ||  || || | |     | || |   |    ||     | ||| ||  |  ||||||| | || ||||| ||||| ||||| ||| |  ||||||| || ||||||||||| || || ||||||||||||||| |  || 
taccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcagaTACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGG

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------------------------------------------------gtaattgatatatca----atctcatctacatacgagtaacattctcttaactaccaaa----caagatccagaaaattga--tttctcttg--------cagATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG
                                                                                               |||| ||  |  |||    ||||  |  |      | | |  ||   ||  |||   ||    |||  | || |  |||||   ||   |||        |||||| | || ||||| || |||||||| ||| |||| ||||| || |||||||||||||| ||| |||| || |||||| |  ||
gtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccagATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcagATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG
                                           tttctcttgc  CT-rich tract
                                   aaaattgattt  TA-rich tract