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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcaaaacgcagtcttttcgaaaaatgtcacaatctacatcttattatacttttctcttttctcgcttgtgcagTCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G25870.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124998814|gb|EL071083.1|EL071083
EST:     GGAAACGAGATTTCATTAGAATTTATGAAAAATGTCACA                         TCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAGCATGGAGA
genomic: GGAAACGAGATTTCATTAGAATTTATGAAAAATGTCACAgtatgtttca ... gcttgtgcagTCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAGCATGGAGA
EST: gi|124917244|gb|EH991118.1|EH991118
EST:     AACGAGATTTCATTAGAATTTATGAAAAATGTCACA                         TCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAGCATGGAGA
genomic: AACGAGATTTCATTAGAATTTATGAAAAATGTCACAgtatgtttca ... gcttgtgcagTCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAGCATGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaatgtcacaatctacatcttattatacttttctcttttctcgcttgtgcagTCCGAGGACATGAGTGTACATGTCACCAGTGTGGGGAAG
                    tcttattatacttttc  CT-rich tract
 atcttattatactttt  TA-rich tract