1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttagattcatatatctgtatgtgaataatttgtcttatatagttccataaaactttgaacccaaacatttctaccttcaaatattcgtctcttttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTG
species | Arabidopsis thaliana |
transcript | AT4G21790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAG GTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTEST: gi|86078543|gb|DR374300.1|DR374300
genomic: GGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAGgtacttagat ... ttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTT
EST: TAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAG GTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTEST: gi|164108788|gb|ES026429.1|ES026429
genomic: TAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAGgtacttagat ... ttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTT
EST: TAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAG GTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGEST: gi|125184027|gb|EL198981.1|EL198981
genomic: TAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAGgtacttagat ... ttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCG
EST: AAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCAACGAG GTTGGATCTGTGACAGCTATAEST: gi|125013649|gb|EL085918.1|EL085918
genomic: AAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCA-CGAGgtacttagat ... ttcattgcagGTTGGATCTGTGACAGCTATA
EST: GAGTCAAAAGGAAGAAGGAAGAAACTCCACGAG GTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTT
genomic: GAGTCAAAAGGAAGAAGGAAGAAACTCCACGAGgtacttagat ... ttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTT
aaaactttgaacccaaacatttctaccttcaaatattcgtctcttttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTG
ttcgtctcttttcatt CT-rich tract
ttcaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttagattcatatatctgtatgtgaataatttgtcttatatagttccataaaactttgaacccaaacatttctaccttcaaatattcgtctcttttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG