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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgataagataacaactctatttgccattttccttctcttggggttttacttatataagcataacatgttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G18810.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064609|gb|DR360366.1|DR360366
EST:     AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG                         GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
EST: gi|125185077|gb|EL200031.1|EL200031
EST:     AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG                         GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTG
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTG
EST: gi|125157993|gb|EL186803.1|EL186803
EST:     AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG                         GAATTGTTTCCACAACAAA
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAA
EST: gi|125037275|gb|EL109544.1|EL109544
EST:     AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG                         GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGA
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGA
EST: gi|86064608|gb|DR360365.1|DR360365
EST:     AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG                         GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccattttccttctcttggggttttacttatataagcataacatgttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
                                    gcataac  putative branch site (score: 3)
                                              ttttgtt  putative PPT
                      ttttacttatataa  TA-rich tract