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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgttattctttaatctattttgttatccacattcgagacagtgtgttcaatctgcatttctttagATGGTGGGAAGGGCAGCTGGGAGAAATCATGGCGTACTTGTGTTGTAAGGGCTCAGAAATCGCTTGTTGCTACTCCTGAAACGCCACTGCAATCACGTCC

Basic information

species Arabidopsis thaliana
transcript AT4G17330.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443654|gb|EG486246.1|EG486246
EST:     GGATGAAGCTTATATGATATCTGCATTTGGTGGTGCAG                         ATGGTGGGAAGGGCAGCCGGGAGAAATCATGGCGTACTTGTGTTGTAAGGG
genomic: GGATGAAGCTTATATGATATCTGCATTTGGTGGTGCAGgtaaaattgt ... atttctttagATGGTGGGAAGGGCAGCTGGGAGAAATCATGGCGTACTTGTGTTGTAAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatctattttgttatccacattcgagacagtgtgttcaatctgcatttctttagATGGTGGGAAGGGCAGCTGGGAGAAATCATGGCGTACTTGTGTTGTAAGGGCTCAGAAATCGCTTGTTGCTACTCCTGAAACGCCACTGCAATCACGTCC
 ctttaat  putative branch site (score: 4)
                                            catttcttt  putative PPT
     tattttgttat  TA-rich tract