Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttacataattgcggtttttatgttcaagcatatcaatcctttttcatttttatgtacctatcttctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC

Basic information

species Arabidopsis thaliana
transcript AT4G17150.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
--gtacttacataattgcggtttttatgttc---aagca-tatcaatcctttttcattttt----------atgtacctatctt---ctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
   | ||| || ||       | | ||||||   ||||| |||  |   ||   |  | ||          |  || ||| |||   ||  ||||||| ||||||| ||||||||||| || |||||||||||||||||||| || || || ||||  | |||| ||||| | |   | |||||||||||||| || | ||
gtattctttca-aaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaaatttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
--gtacttacataattgcggtttttatgttc---aagca-tatcaatcctttttcattttt----------atgtacctatctt---ctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
   | ||| || ||         | ||||||   |||||  ||  |   ||  ||  | ||          |  || ||| |||   ||  |||| || ||||||| ||||||||||| || |||||||||||||||||||| || || || ||||  | |||||||||| | |   | |||||||||||||| || ||||
gtattctttca-aaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaaatctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
----------gtacttacataattgcggtt----tttatgttcaagcatatcaatc--ctttttcatttttatgtacctatcttctggaa-atttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
           | ||       ||| ||||    ||||     | ||||  ||||   | | || ||    || |  | || || |  |  || |||||||||| || ||||| || |||||||||||||||||||||||||| || || |||| ||||||||||||||| |   | ||||||||||||||||| |  |
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ08928 (Selaginella moellendorffii), 3'ss of exon 8
gtacttacataattgcggtttttatgttcaagcatatcaatcctttttcatttttatgtacctatcttctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
                               | || | |    |||||| |   |    || |    |    |||||  ||||||||||| || ||||| |||||||| || |||||||||||| |  | || |||| |||||| || |||||     | ||||| |||||||| || || |
-------------------------------gtatgttatcgttttttcctgagttataacttcgacttgcaaaattaccagGGAGACAAGAACATCATTAAGTTTGAGGGAGATCACAACTCTGCCAGGCCCCAGTTTTATTACGACTCAGTCACCATTTTCTTTTACAATGTGCTGCGTC

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ29782 (Selaginella moellendorffii), 3'ss of exon 8
gtacttacataattgcggtttttatgttcaagcatatcaatcctttttcattt---ttatgtacctatcttctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
                               | || | |    ||| || | |   ||||  || |    |    |||||  ||||||||||| || ||||| |||||||| || |||||||||||| |  | || |||| |||||| || |||||     | ||||| |||||||| || || |
-------------------------------gtatgttatcgttttctcctctgagttata-acttggacttgcaaaattaccagGGAGACAAGAACATCATTAAGTTTGAGGGAGATCACAACTCTGCCAGGCCCCAGTTTTATTACGACTCAGTCACCATTTTCTTTTACAATGTGCTGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagcatatcaatcctttttcatttttatgtacctatcttctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC
                tttttcatttttatgt  TA-rich tract