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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctgctcgctttcactagtcatggttattgcaattgtatcatccatgtcatgcttcatcaatttaccagcatgctactctcttcttatatgttgcagAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATTCTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAG

Basic information

species Arabidopsis thaliana
transcript AT4G11440.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11440.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 8
------------------------------------------------gtctctgctcgctttcactagtcatggt-tattgcaattgta--tcatccatgtcatgcttcatcaat-ttaccagcatgctactctcttcttatatgttg-cagAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATTCTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAG
                                                 | | |    ||     |||  |||  | | ||| |||      |||    ||   |||    |  || ||       || |   || |   | | | |   ||| || ||||| || ||  |  | ||||||||||| |||||| |  | ||||||||||| |||||||||| ||||||   | | ||||| | |||  | || 
gtatcattgtctgaatcttgtcattatcatttagatcaaaagaaaatattttataggagcaactgctatacattctgtcttgaaatctctgttcaaatgtgaattgcacatttgatatttgtcttttgatgtgctttgtatgtctatcatcagGGGGTTGATTCCGAGGTTGATTATGTACATGTCTCAAGGATCACTGTTCTTTGCTTCATATGAATTTTTCAAGAGGACATTTTCTCTGGAAGCATCACAT

upper sequence: AT4G11440.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA08G01790.1 (Glycine max), 3'ss of exon 13
------------------------------------------------gtctctgctcgctttcactagtcatggttattgcaattgtatcatccatgtc---atgcttcatcaat-ttaccagcatgctactctcttcttatatgttg-cagAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATTCTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAG
                                                 | | |    |      |||  |||  || | |  |       || ||  |    ||    |||  || ||       || ||  || |   | | | |   ||| || ||||| || ||  |  | ||||||||||| |||||| |  | ||||||||||| |||||||||| ||||||   | | ||||| | |||  |  | 
gtattattgtctgaatcttgcctctatcatttagatcagaagaaaatattttataggagtaactgctatacatt-ttgtcgtgaaatctctattcaaatgtgaattgcacattgatatttgtcttttgatatgctttgtatgtctatcatcagGGGGTTGATTCCGAGGTTGATTATGTACATGTCTCAAGGATCACTGTTCTTTGCTTCATATGAATTTTTCAAGAGGACATTTTCTCTGGAAGCACCATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtcatgcttcatcaatttaccagcatgctactctcttcttatatgttgcagAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATTCTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAG
                               ctactctcttcttat  CT-rich tract
              atcaattta  TA-rich tract