Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagactattatttgcttctttaacaatgatcattcacatataatatggtataatgtatattctgtcaatgacattaacagGGTGAGGGTAAGCAATATGAGCTTCCCATTAAAAAGCCAAGCGACATATGCACGATTATGTATACTAGCGGAACAACTGGTGACCCGAAGGGAGTTATGA

Basic information

species Arabidopsis thaliana
transcript AT4G11030.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11030.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM5G861300_T01 (Zea mays), 3'ss of exon 8
---gtaagagactattatttgcttctttaacaatgatcattcacatataatat-----ggtataa-tgtatattctgtcaatgacattaac---------agGGTGAGGGTAAGCAATATGAGCTTCCCATTAAAAAGCCAAGCGACATATGCACGATTATGTATACTAGCGGAACAACTGGTGACCCGAAGGGAGTTATGA
    | ||  | | | |  |  |  ||||||  | || ||||| |||  | ||       ||||| ||  ||  ||  || | |||| | |         |||  |  |   |  ||| ||| |||||  | ||  ||      ||||||||||| || ||||||||||| ||||| ||||||||||| || |||||  |||
tggattagttattgt-acctattggtttaactgt-ataattcatataagaaatttgtgactataaatgcctacccttccatttacatgagctatatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGCACTATAATGTATACTAGTGGAACTACTGGTGACCCAAAAGGAGTACTGA

upper sequence: AT4G11030.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA01G43470.5 (Glycine max), 3'ss of exon 8
----------gtaagagactattatttgcttctttaacaat-gatcattcacatataatatggtat--aatgtatattc---tgtcaatgacattaacagGGTGAGGGTAAGCAATATGAGCTTCCCATTAAAAAGCCAAGCGACATATGCACGATTATGTATACTAGCGGAACAACTGGTGACCCGAAGGGAGTTATGA
          || |    || ||    |    | |  |  | | |  ||   ||||  | ||||    | |    ||||   | | |||  |    ||||||| |   | ||   | ||| ||||| ||||| ||    || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||  |||
gttaatttcagtcatgacctcttggaagtaattatgtcttttgcttctttggatattttgtggttcccattcctaattcattttttaatatctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatcattcacatataatatggtataatgtatattctgtcaatgacattaacagGGTGAGGGTAAGCAATATGAGCTTCCCATTAAAAAGCCAAGCGACATATGCACGATTATGTATACTAGCGGAACAACTGGTGACCCGAAGGGAGTTATGA
            atataatatggtataa  TA-rich tract