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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctctcttaccgtttcctaatcgcttcttccattgaatgttcatctggttgtagttttttatacaagtactacaagtttctctattttattttcccgaccagttcttatgaggtgttcaacttctttcagGGCCAATACAAGTCAACTCTGGTTTGTCCAGTTTGCGGAAAAATATCAATCACTTTTGATCCCTTCATGTACTTGTCTGTACCTTTGCCATCAACACTTA

Basic information

species Arabidopsis thaliana
transcript AT4G10570.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10570.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G31560.1 (Glycine max), 3'ss of exon 8
gtaagtctctctcttaccgtttcctaatcgcttcttccattgaatgttcatctggttgtagttttt-tatacaagt--actacaagtttctctattttattttcccgaccagttcttatgaggtgttcaacttctttcagGGCCAATACAAGTCAACTCTGGTTTGTCCAGTTTGCGGAAAAATATCAATCACTTTTGATCCCTTCATGTACTTGTCTGTACCTTTGCCATCAACACTTA
                                   | | || || | |   |  | || | |||     | |||||  | |     | ||| || |        |       || || ||   |    || ||||  ||||| ||||||||||||||  ||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||  ||||  |||| || ||  | |
-----------------------------------ttctttaaaagcttgacaagatggactttcaactttcaagttcattctggttatctttactaagcacgtcattttgatttttctgcaata---aaattct--cagGGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATCACTTTCGATCCATTCATGTACTTATCATTACCACTGCCTTCCACTGTCA

upper sequence: AT4G10570.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 9
gtaagtctctctcttaccgtttcctaatcgcttcttccattgaatgttcatctggttgtagttttt-tatacaagt--actacaagtttctctattttattttcccgaccagttcttatgaggtgttcaacttctttcagGGCCAATACAAGTCAACTCTGGTTTGTCCAGTTTGCGGAAAAATATCAATCACTTTTGATCCCTTCATGTACTTGTCTGTACCTTTGCCATCAACACTTA
                                   | | || || | |   |  | || | |||     | |||||  | |     | ||| || |        |       || || ||   |    || | |   ||||| ||||||||||||||  ||||||||||||| || || ||||| ||||| ||||| ||||| ||||||||||| ||  ||||  |||| || ||  | |
-----------------------------------ttctttaaaagcttgacaagatggactttcaactttcaagttcattctggttatctttactaagcacggcattttgatttttctgcaata---aaatccc--cagGGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATTACTTTCGATCCATTCATGTACTTATCATTACCACTGCCTTCCACTGTCA

upper sequence: AT4G10570.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtctctctcttaccgtttcctaatcgcttcttccattgaatgttcatctggttgtagttttttatacaagtactacaagtttctctattttattttcccgaccagttcttatgaggtgttcaactt--ctttcagGGCCAATACAAGTCAACTCTGGTTTGTCCAGTTTGCGGAAAAATATCAATCACTTTTGATCCCTTCATGTACTTGTCTGTACCTTTGCCATCAACACTTA
                                       || || ||   |||  |  |  |  || | | | | | ||||      |  | ||     |    |   | ||       || |  |||    |  |||||| ||||| ||||||||||||||||| ||||||||| | ||||| ||||| || |||||||| |||||||| |||||  | ||  |||| |||||  | |
-------------------------------------gttttaaagtatttcttttctt--tacttaaaatatggagtacagaaacttggaattaggcataataatatggtcactaacagtctataaccaaacactcagGGTCAATATAAGTCAACTCTGGTTTGCCCAGTTTGCAGCAAAATTTCAATAACATTTGATCCGTTCATGTATTTGTCATTGCCGCTGCCTTCAACGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctctattttattttcccgaccagttcttatgaggtgttcaacttctttcagGGCCAATACAAGTCAACTCTGGTTTGTCCAGTTTGCGGAAAAATATCAATCACTTTTGATCCCTTCATGTACTTGTCTGTACCTTTGCCATCAACACTTA
                                             cttctttc  CT-rich tract
     tctattttatttt  TA-rich tract