Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagatttgcatgtaccattattctctgtttcttataatctctttaaccaatttcaagagtttgctatgttttgcagGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCTTCCATCGATATACACCATTTCG

Basic information

species Arabidopsis thaliana
transcript AT4G04880.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087455|gb|DR383214.1|DR383214
EST:     GTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAATCTTTCCGGATTCCG                         GTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCTTCCATC
genomic: GTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAATCTTTCCGGATTCCGgtaatagatt ... tgttttgcagGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCTTCCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctgtttcttataatctctttaaccaatttcaagagtttgctatgttttgcagGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCTTCCATCGATATACACCATTTCG
                   ctttaac  putative branch site (score: 3)
          ttataatctctttaa  TA-rich tract