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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaacagcaaacacttgtaacacatctttattcaaccaagtaaacctaagaactgatagttttcttctctctctctcttttgttttgattccgcagTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTAATTAAGCCTAATTCGACCGATCCACTTAAATTAGGAGTTAGGGTATGGC

Basic information

species Arabidopsis thaliana
transcript AT4G01690.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01690.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 3'ss of exon 8
gtaaaaaacagcaaacacttgtaacacatctttattcaa-ccaagtaaacctaagaactgatagttttc---ttctctctctctcttttgttttgatt--ccgcagTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTAATTAAGCCTAATTCGACCGATCCACTTAAATTAGGAGTTAGGGTATGGC
          |  |     |       || || || ||| |    ||  |        |  | |||||    || | |||    | |   |||   ||  |||||| | ||  ||||  | ||||||||||| ||||||||||||||||| ||||| ||||| |||||| | |  |||||||||   || || || || |||||||
------tgtggtgacagggttgggtggattttcatgcaagctgtatattctccgtggttttttgtttttggattgtatctaatacctcaatttcttttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCATTAATCCTAATGCAAAGGATCCACTTGTTTTGGGTGTGAGAGTATGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079644|gb|DR375401.1|DR375401
EST:     TGCTGTTGAACTACATTGGCGGGTCTACAAACACCGGAATTCTGTCCAAG                         TCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTA
genomic: TGCTGTTGAACTACATTGGCGGGTCTACAAACACCGGAATTCTGTCCAAGgtaaaaaaca ... gattccgcagTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTA
EST: gi|116467597|gb|EG510189.1|EG510189
EST:     TGCTGTTGAACTACATTGGCGGGTCTACAAACACCGGAATTCTGTCTAAG                         TCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTA
genomic: TGCTGTTGAACTACATTGGCGGGTCTACAAACACCGGAATTCTGTCCAAGgtaaaaaaca ... gattccgcagTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacctaagaactgatagttttcttctctctctctcttttgttttgattccgcagTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGAAAATGCTAATTAAGCCTAATTCGACCGATCCACTTAAATTAGGAGTTAGGGTATGGC
                  ttttcttctctctctc  CT-rich tract
                                    ttttgtttt  TA-rich tract