1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaataaaacttaaatcctaagattgtttttgaatagaagttaaagaaagatgtatcattaatggtttgctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAG
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTTTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|116483179|gb|EG525771.1|EG525771
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|163990347|gb|ES103099.1|ES103099
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTT-ATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACEST: gi|125017774|gb|EL090043.1|EL090043
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAAC
EST: TTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|124745664|gb|EH836476.1|EH836476
genomic: TTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGATTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAEST: gi|124965841|gb|EL039993.1|EL039993
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAA
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATEST: gi|164203480|gb|ES044209.1|ES044209
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAAT
EST: GAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|125036597|gb|EL108866.1|EL108866
genomic: GAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|163997877|gb|ES205387.1|ES205387
genomic: CCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTAGCTCATTACAAATCTGGAGTCTATEST: gi|125122565|gb|EL169107.1|EL169107
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTT-GCTCATTACAAATCTGGAGTCTAT
EST: GAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCCGACEST: gi|124783405|gb|EH873249.1|EH873249
genomic: GAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATEST: gi|124820883|gb|EH905749.1|EH905749
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAAT
EST: GTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|125151406|gb|EL183553.1|EL183553
genomic: GTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: GTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|164008065|gb|ES018831.1|ES018831
genomic: GTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: GAGGTTTATAAGAATGGACCTGTTGAAGTCTC-TTTACCGTTTATGAG GATTTTGCTCAATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAEST: gi|124973631|gb|EL047243.1|EL047243
genomic: GAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTC-ATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAA
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACEST: gi|124903975|gb|EH978055.1|EH978055
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAAC
EST: TTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAEST: gi|116483180|gb|EG525772.1|EG525772
genomic: TTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGC-TCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAA
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|86077484|gb|DR373241.1|DR373241
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|125201827|gb|EL216781.1|EL216781
genomic: CAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: CCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACEST: gi|124890872|gb|EH969774.1|EH969774
genomic: CCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
EST: GTTGAAGTCTCTTTTACCGTTTATGAG GATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTGCTAAC
genomic: GTTGAAGTCTCTTTTACCGTTTATGAGgtaataaaac ... ctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAAC
tgtttttgaatagaagttaaagaaagatgtatcattaatggtttgctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAG
cattaat putative branch site (score: 3)
tttgcttt putative PPT
tatcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaacttaaatcctaagattgtttttgaatagaagttaaagaaagatgtatcattaatggtttgctttggttagGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT