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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaattcaacaaactactcttatatcagtatctctacatcatagaccaacaattgattcatttttctgattccaccaaatctcttttcttcagGTTGAGGCGCTAGTTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G62600.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125163361|gb|EL190131.1|EL190131
EST:     ACATGAACGTGAACATTACACTG                         GTTGAGGCGCTAGTTGGTTTTGAGAAATCATTCAAACACTTGGATGATCAC
genomic: ACATGAACGTGAACATTACACTGgtaaataaat ... ttttcttcagGTTGAGGCGCTAGTTGGTTTTGAGAAATCATTCAAACACTTGGATGATCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatagaccaacaattgattcatttttctgattccaccaaatctcttttcttcagGTTGAGGCGCTAGTTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAG
                         ttctgat  putative branch site (score: 3)
                                         tctcttttcttc  putative PPT
            aattgattcattttt  TA-rich tract