Sequence
atgc intronic sequence ATGC exonic sequencegtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G62120.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G62120.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 8
------------------gtaaatact-tggaagtacttagattatttttctcatgtgctctacaactgtt---aacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG
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ctaaaaggctatgttgatgttgatgttgtatttccagttgcatagtgttatgcacaaattatgtttatgtttgtaatatattgaacctacaccctt-gcagATTGGAGTGATGGTGATGACACATGGTGATGACAAAGGCTTAGTATTACCACCAAAGGTGGCGCCAATCCAGGTAATTGTGATTCCAGTGCCTTATAAGG
upper sequence: AT3G62120.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 9
-------gtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG
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gtaagctttaatttcttgaatatacattcattggaggattc-----ctctacatcatattgcatctatatttgttttttttaacagATTGGGGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTTATTGTGATTCCTGTGCCTTACAAAG
upper sequence: AT3G62120.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 9
-------gtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG
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gtaagctttgatttcttgaatatacattcattggaggattcctctacatcata-ttgc--atttatatttctgttttttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164050754|gb|ES103519.1|ES103519EST: AGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACG ATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCT
genomic: AGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatactt ... ccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG
tgttaac putative branch site (score: 2)
ccttttat putative PPT
ttaacttatcatttt TA-rich tract