1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcttatatcttgattgtttgggagagaatattagcttttacaggaatcaaatttacttttcagctatcctttaattgtatcatcatattcttcagtgttcctttgtttatagcctttattgcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGG
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAG GTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATEST: gi|125255377|gb|EL269462.1|EL269462
genomic: ATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGgtatcttata ... gcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCAT
EST: TAATTTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAG GTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGEST: gi|124861786|gb|EH946223.1|EH946223
genomic: TAA-TTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGgtatcttata ... gcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGG
EST: ATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAG GTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGT
genomic: ATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGgtatcttata ... gcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGT
tgtatcatcatattcttcagtgttcctttgtttatagcctttattgcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGG
tttgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttatatcttgattgtttgggagagaatattagcttttacaggaatcaaatttacttttcagctatcctttaattgtatcatcatattcttcagtgttcctttgtttatagcctttattgcattcacagGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA