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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgttttttttttttctcttgtccagctctactttctcccttccatggtttacttaggacaccactatttaacttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT

Basic information

species Arabidopsis thaliana
transcript AT3G54440.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54440.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
gtaacatgttttttttttttctcttgtccagctctactttctcccttccatggtttacttaggacaccactatttaac-ttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT
                     |  ||   | || |  || | |      |     |  ||||   |  |      ||   | | |  | | ||  ||   | ||  |     ||| ||      ||||||||  |  | |||||  || | ||||| ||||| ||| | ||||| |||||||| |||||||| || ||||||||  ||||||||||||| |||||||
--------------------gtactgctaatctttttttccccttcaataaaaaattgttagtttatgatggccaaatgctatttgtttttttaagacactaat--aattgctgtgct----tacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT

upper sequence: AT3G54440.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
gtaacatgttttttttttttctcttgtccagctctactttctcccttccatggtttacttaggacaccactatttaacttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT
       ||      |  |  | |||| |   |    | ||  | ||   ||      ||| |  |    |  ||   |||   |   | | | ||| || |||   | || | |        ||||||||  || | |||||  || | ||||||||||| ||| ||||||| |||||||| |||||||| || ||||| || || ||||||||||| |||||||
-------gtgcaacctcctcttgttgttctctttggatatcatctttgtgtg------ttaagttaatgttggtttgattgatcatattgtcgagatcttcattactctctggcata------cagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaacttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT
                                            ctgttcctc  CT-rich tract
                        attttgattta  TA-rich tract