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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaccgttgcaggtgatatatctgtcgcctcatatgtcaaaattcaatcttgtaataagtatcacaggaaagggtttctgagatcaagactttgtttatatgcagCATTATGATGGTGATTTGAAGGAACTCTGTCTGGATTTCACAGTCACTGAAGAGTTTTGTGGAAAAATGAGCATAATTGAACTCAAACCCGGTGGGAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G53090.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53090.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G37310.4 (Glycine max), 3'ss of exon 10
gtaaaaaccgttgcaggtgatatatctgtcgcctcatatgtcaaaattcaatcttgtaataagtatcacaggaaagggtttctgagatcaagactttgtttatatgcagCATTATGATGGTGATTTGAAGGAACTCTGTCTGGATTTCACAGTCACTGAAGAGTTTTGTGGAAAAATGAGCATAATTGAACTCAAACCCGGTGGGAAGG
           |  || |    ||| | |  | |     |  |   |  | || |||  |  | ||   |  |||    |     | |||     |  || ||  |||| ||||||| |||||| | ||||| |||| ||| ||||||||||| |||||||| |  |  || |||| |    |  | ||||| ||| | ||||| || |
------tttaatttagcttgattatgtttgacttgggtgggtactgtgtattcctgttctg-gcattttatcaaactactggaaggttcacatgctcattcat--gcagAATTATGACGGTGATGTCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGGTGGAACTTAAATCTGGTGGCAAAG

upper sequence: AT3G53090.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 8
gtaaaaaccgttgcaggtgatatatctgtcgc-ctcatatgtcaaaattcaatcttgtaataagtatcacaggaaagggtttctgagatcaagactttgtttatatgcagCATTATGATGGTGATTTGAAGGAACTCTGTCTGGATTTCACAGTCACTGAAGAGTTTTGTGGAAAAATGAGCATAATTGAACTCAAACCCGGTGGGAAGG
    || |  ||| |  ||  || | | |     |||  |||  |  | ||   | ||||||  | |  |   ||    ||    || |       || | | | | |||||||||||||| ||| |||||||||||| ||||||||||||||| || ||||| |  |  || |||  |  ||| ||||| |||||||| ||||| ||||
--tcaatctcttggatttgtaatctgtattaagttcagctgt--atgtgca---tagtaatatttgtttctccaat---ttgtgaagtttctcgtgttttgtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAGAATCATTAGGCAAACGGCACATTATTGAGCTCAAACCTGGTGGCAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaataagtatcacaggaaagggtttctgagatcaagactttgtttatatgcagCATTATGATGGTGATTTGAAGGAACTCTGTCTGGATTTCACAGTCACTGAAGAGTTTTGTGGAAAAATGAGCATAATTGAACTCAAACCCGGTGGGAAGG
                                       ctttgttt  CT-rich tract
                                        tttgtttatat  TA-rich tract