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gtaagtatttcgcttctatgtcaatgtgtttgaacaatcatcttcttaacctaaaataaaacttctttcgttcttgaaatggatttttcagGATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTA GATGATCATTCAAAGGATTGCAAAEST: gi|86074500|gb|DR370257.1|DR370257
genomic: AGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTAgtaagtattt ... gatttttcagGATGATCATTCAAAGGATTGCAAA
EST: TCACTTACTCTGCTTGCGTA GATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAEST: gi|86037686|gb|DR333441.1|DR333441
genomic: TCACTTACTCTGCTTGCGTAgtaagtattt ... gatttttcagGATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGA
EST: GAGGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTA GATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGA
genomic: GAGGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTAgtaagtattt ... gatttttcagGATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGA
atcatcttcttaacctaaaataaaacttctttcgttcttgaaatggatttttcagGATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG
tttttc CT-rich tract
taaaataaaacttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttcgcttctatgtcaatgtgtttgaacaatcatcttcttaacctaaaataaaacttctttcgttcttgaaatggatttttcagGATGATCATTCAAAGGATTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC