Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacatgcaggctaatgatttttcgagttgtgtttagataaacttcctggattgattttttagtcatcttaatcccatgattcactttcagGTTCACTGGAGGAGTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAAATGTACCTTG

Basic information

species Arabidopsis thaliana
transcript AT3G52390.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083780|gb|DR379539.1|DR379539
EST:     CAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAG                         GTTCACTGGAGGAGTTGCYCATTCATTTACTGGTAGTGCGTCGGACCGCGA
genomic: CAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGgtgaacatgc ... tcactttcagGTTCACTGGAGGAGTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataaacttcctggattgattttttagtcatcttaatcccatgattcactttcagGTTCACTGGAGGAGTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAAATGTACCTTG
                              tcttaat  putative branch site (score: 3)
                                            ttcactttc  putative PPT
              attgattttttagt  TA-rich tract