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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaggccatttttattatttgtgctgagaattaatatcaaatactataagtacagtataccttaatatgcaactgagataacatctatgaacaatgctcctttttttatttacattctgaagGTAGTAATCAAACAGCCTATAGGAGTGGTTCGATATCCTGGGGTCGCACAAGGATTATATGTTGCTTCTCCGGAAG

Basic information

species Arabidopsis thaliana
transcript AT3G52260.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399467|gb|EG442059.1|EG442059
EST:     TATCAAAGATATATCGAGCACTAGCAGATGGTATAGTTGAAGAAGACGAG                         GTAGTAATCAAACAGCCTATAGGAGTGGTTCGATATCCTGGGGTCGCACAA
genomic: TATCAAAGATATATCGAGCACTAGCAGATGGTATAGTTGAAGAAGACGAGgcaaggccat ... cattctgaagGTAGTAATCAAACAGCCTATAGGAGTGGTTCGATATCCTGGGGTCGCACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaactgagataacatctatgaacaatgctcctttttttatttacattctgaagGTAGTAATCAAACAGCCTATAGGAGTGGTTCGATATCCTGGGGTCGCACAAGGATTATATGTTGCTTCTCCGGAAG
        agataac  putative branch site (score: 3)
                             ctcctttttttattta  putative PPT
                                 tttttttatttacatt  TA-rich tract