1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagttttattcctaacttccactctctagtgataagacactccatccaagttttggagttttgaatatcgatatctgaactgatctcattgcagCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATG
species | Arabidopsis thaliana |
transcript | AT3G51820.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATTGCTATCTTATATATACTCTGCTCCACCTCTTAAG CTAAAACAAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATEST: gi|124931787|gb|EL009112.1|EL009112
genomic: CATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGgtaagtttta ... ctcattgcagCTAAAAC-AAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATAT
EST: CATTGCTATCTTATATATACTCTGCTCCACCTCTTAAG CTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTEST: gi|124850350|gb|EH934787.1|EH934787
genomic: CATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGgtaagtttta ... ctcattgcagCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATT
EST: GGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAG CTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATT
genomic: GGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGgtaagtttta ... ctcattgcagCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATT
ctccatccaagttttggagttttgaatatcgatatctgaactgatctcattgcagCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATG
aactgat putative branch site (score: 3)
tctcatt CT-rich tract
ttttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttattcctaacttccactctctagtgataagacactccatccaagttttggagttttgaatatcgatatctgaactgatctcattgcagCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT