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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtctgtaccttgtcttattttgcttcttctttgatctttggaactaatcatttcgtgcttcgagcagGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAG

Basic information

species Arabidopsis thaliana
transcript AT3G51130.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 8
----------------------gtaaagtct-gtaccttg-tcttattttgcttcttc-tttgatctttg--gaactaatcatt-tcgtgcttcgagcagGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAG
                       |   |||  | |  ||| | |||| | | |  ||| ||   | | |   || || ||  || | ||  |     |||||||| |||||||||||||| || |||||||| ||||| | |||||||
tccaaaatatctcgtctctattcttgtgtcaagcaatttgatgttatgtggttcattcattcagtgtataatgatctcatatttcttgttttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattttgcttcttctttgatctttggaactaatcatttcgtgcttcgagcagGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAG
                             aactaat  putative branch site (score: 2)
                                taatcattt  TA-rich tract