Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccatagataaacctgttcatcacacagattcatagaagattattattagctctttttgcaacaatttggttcttgatttgtttcagGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAGCTTTCGAAGCCATCTTCAGAAATGGAACAGAACCAGGTGTCAAACTAAAATCATCTTCTTCT

Basic information

species Arabidopsis thaliana
transcript AT3G48425.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164055327|gb|ES172870.1|ES172870
EST:     CGTGGGATAGAACTTGAAG                         GTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAGCTTTCGAAGCCAT
genomic: CGTGGGATAGAACTTGAAGgtgccataga ... tttgtttcagGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAGCTTTCGAAGCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaagattattattagctctttttgcaacaatttggttcttgatttgtttcagGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAGCTTTCGAAGCCATCTTCAGAAATGGAACAGAACCAGGTGTCAAACTAAAATCATCTTCTTCT
                                       tcttgat  putative branch site (score: 4)
                                             tttgtttc  CT-rich tract
     agattattatta  TA-rich tract