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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaacaaagaaatagcactttctcttcttcatgttgctgacaaaatgtgtttgaaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G46590.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124734515|gb|EH825917.1|EH825917
EST:     ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAG                         GTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTAC
genomic: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaaca ... aaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTAC
EST: gi|116485643|gb|EG528235.1|EG528235
EST:     ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAG                         GTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTA
genomic: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaaca ... aaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatagcactttctcttcttcatgttgctgacaaaatgtgtttgaaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAG
                          tgctgac  putative branch site (score: 2)
                                         tttgaaaa  TA-rich tract