Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaattctcaatcttgttgaaactgactttctatgatctttagtaaagaactaatggaacaaattcagagagtgagttccttaaaaccatttattgttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC

Basic information

species Arabidopsis thaliana
transcript AT3G45300.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G052630_T02 (Zea mays), 3'ss of exon 6
gtatgtgaattctcaatcttgt-tgaaactgactttctatgatctttagtaaagaactaatg-gaacaaattcagagagtgagttccttaaaaccatttattgttgtggttgctt-----tgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
                    ||    |||        |||  || || |  | ||   |    ||||| || |        || |   |       ||  |  | ||  ||| |      | ||| ||||||||||||||||||||||||||||| || ||| | |||||||| ||
--------------------gtacagaaccactccattatcttcattggacatgattgagcatgaacacatgcgtttctacagctttctggtcatgttactgatggtccttgttcacgactacagGTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACAC

upper sequence: AT3G45300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 7
gtatgtgaattctcaatcttgttgaaactgactttctatgatctttagtaaagaactaatggaacaaattcagagagtgagttccttaaaaccatttattgttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
|||    |   |||  |  | || |   ||    |   ||| | | |      |  || |   |||  ||     |    ||| || |      |  ||  ||  | || |     || ||||||||||||||||| ||||||||||| || ||| | |||||||| ||
gtacagaaccactccgttatcttca--ttggacatgattgaacctgaacgtgtatgtatttctacagctttctc-accatgttactgaggg---tgcatgtttacgattac-----agGTTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC

upper sequence: AT3G45300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA11G15900.1 (Glycine max), 3'ss of exon 8
gtatgtgaattctcaatcttgttgaaactgactttctatgatctttagtaaagaactaatggaacaaattcagagagtgagttccttaaaaccatttattgttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
   |   ||   | |  | |     || |||      ||    || | || ||   | |   || | |     |   ||| |  || || |  ||||||  |||         | |||||||| |||||| ||||||||||| ||||| || ||||| ||||| |||||
---ttgaaaggatgaggcctcccttaaatgataaatcat----ttgattacag---tgagaaaatagagatgaaagatgaatatct-aacattatttatgtttga-------ctacagATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC

upper sequence: AT3G45300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 8
gtatgtgaattctcaatcttgttgaaactgactttctatga-tctttagtaaagaactaatggaac----aaattcagagagtgagttccttaaaaccatttattgttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
                        | |  || |    || | || | | |||    | |||  |||    | |   | ||||        | |||| |    ||| ||   |||    | |||||||| |||||| ||||||||||| ||||| || ||||| ||||| |||||
-----------------------aagaaagagtcatgatcactcataaataacatgcaaatctaaccgtgagaaaaatagagatgaaagatgaaaatctaacattatttatgtttgactacagATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC

upper sequence: AT3G45300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtgaattctcaatcttgttgaaactgactttctatgatctttagtaaagaactaatggaacaaattcagagagtgagttccttaaaaccatttattg---ttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
                     ||| |      || |  | || || ||| ||  || || | ||  |  | | | ||| |    | | | ||  ||| ||    || |  |  |  |||||||||||||||||||||||||| |||||||| || ||||| ||||| || ||
-------------------aattgcagtctgattgcagttatatt-agtgaaagacaaaagcaaggaggtta-acagtcaaggacatgatacttttttttaatttttttatgacaatgcagATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125117616|gb|EL166685.1|EL166685
EST:     GAATCACGGCTTTCATCATAGAGAAAGGAATGACCGG                         ATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
genomic: GAATCACGGCTTTCATCATAGAGAAAGGAATGACCGGgtatgtgaat ... tgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaattcagagagtgagttccttaaaaccatttattgttgtggttgctttgcagATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATAC
                                            ttgcttt  CT-rich tract
                      ttaaaaccatttatt  TA-rich tract