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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgtctcaacatgttctgatcatgtttaatgtgacaatcattttctgactctgttatggcaaaatgtcttcagGCTATTAGAAAACACAAGTTTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGG

Basic information

species Arabidopsis thaliana
transcript AT3G28700.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------gtttgttgtctcaacatgttctgatca-tgtttaatgtgacaatcattttctgactctgttatggcaaaatgtcttcagGCTATTAGAAAACACAAGTTTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGG
                         |  | |    |  | |    ||  ||| |  |   | || |  |  |||||| | ||  |      |||||   | ||||| ||| | ||||| ||||||||||||||| | ||| |||| |||||||| ||||| ||||| ||||| || ||| | || || |  || || ||||| |
ttatgcccaatcttctgatgatcctgcctctaacttgtaaactaacttttcaattctctgtttggcttttgttttcttaatcaat----ataaaattcatgcagGCAATTCGGAAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgtttaatgtgacaatcattttctgactctgttatggcaaaatgtcttcagGCTATTAGAAAACACAAGTTTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGG
                        ttctgac  putative branch site (score: 2)
                                              tgtcttc  putative PPT
                 aatcatttt  TA-rich tract