1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagccttgaaaacatttacatactagacactagtcaggattggtttatatcataatgtttcattccttagaatgattacgcctatccttaatattttaattcatgcatctgcagGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAAATACAAACTCATTTCTTGAAGTCATTTCGAATCC
species | Arabidopsis thaliana |
transcript | AT3G27770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGCCATATCCATTTCTTCTAACCTGTCATTAGACATGGCTCCAGTGTG GTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGEST: gi|19799834|gb|AU231124.1|AU231124
genomic: GTGGCCATATCCATTTC-TC-AACCTGTCATTAGACATGGCTCCAGTGTGgtaagccttg ... gcatctgcagGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGG
EST: GTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTG GTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATT
genomic: GTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGgtaagccttg ... gcatctgcagGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATT
tcattccttagaatgattacgcctatccttaatattttaattcatgcatctgcagGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAAATACAAACTCATTTCTTGAAGTCATTTCGAATCC
ttttaat putative branch site (score: 3)
tatccttaatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttgaaaacatttacatactagacactagtcaggattggtttatatcataatgtttcattccttagaatgattacgcctatccttaatattttaattcatgcatctgcagGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAAATACAAACTCATTTCTTGAAGTCATTTCGAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG