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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttttctcagtgtttcatttgaatatgatatacatgagacagaagtatcattgcattctgatgacttgtatatataatcttctatttttcagAATCATTCGTGATATTATTCAAAACCACTTGCTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G27300.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G24250.3 (Glycine max), 3'ss of exon 8
-gtaagcttttctcagtgtttcatttgaatatga-tatacatgagacagaagtatcattgcattctgatgacttgtata-tataatcttctatttttcagAATCATTCGTGATATTATTCAAAACCACTTGCTCCAG
  | ||  ||| | | |  ||| ||| ||||  | ||  ||| |   |     |  |   ||     || | |  | || | |  |  | |||||| |||||| ||||| ||||||||||||||||| ||||| |||
aattagtgttttttaataattctttttaatagaagtaatcatcatctattgcaacaaagacacctaaatcattaatttactttttttctttattttgcagAATTATTCGAGATATTATTCAAAACCATTTGCTGCAG

upper sequence: AT3G27300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G06850.1 (Glycine max), 3'ss of exon 8
--------gtaagcttttctcagtg----tttcatttgaat-atgatatacat------gagacagaag-tatcattgca------ttctgatgacttgtatatataatcttctatttttcagAATCATTCGTGATATTATTCAAAACCACTTGCTCCAG
          ||  || | | || |    | |||| ||| | | |  || | |       | |  |||| ||| |   ||        |  || | |  |   | |  |  | |||||| |||||| ||||| |||||||||||||||||  |||| |||
gtatgtgtagaattttgttttagcgaagttctcatctgagtcaaggcatgcttctctttaatagggaaggtattacaacaaagtagcccaaatcattatttactgtttttctttattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacagaagtatcattgcattctgatgacttgtatatataatcttctatttttcagAATCATTCGTGATATTATTCAAAACCACTTGCTCCAG
                  ttctgat  putative branch site (score: 3)
                                        tcttctatttttc  putative PPT
                            ttgtatatataatctt  TA-rich tract