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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgcaaatctacaggctttacttgaaaatcagatagtttcaggtgataaatttgagtttcgttttgtagCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGG

Basic information

species Arabidopsis thaliana
transcript AT3G26670.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G26550.1 (Glycine max), 3'ss of exon 9
gtgagtttgcaaatctacag----gctttacttgaaaatcagatagtttcaggtgataaatttgagtttcgttttgtagCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGG
|| |||  || | |  |       ||  | | | |  ||   ||||     | ||   ||| | |  ||  ||| | || || ||| |  |  || |||| ||||| | | | |||||  ||||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||
gtaagtcagctacttcaacatgttgccatgcctcatgatacaatagccattg-tgcctaatgtcaactt--tttggcagTTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGG

upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA02G07510.1 (Glycine max), 3'ss of exon 8
gtgagtttgcaaatctacag----gctttacttgaaaatcagatagtttcaggtgataaatttgagtttcgttttgtagCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGG
|| |||  || | || |       ||  | ||| |  ||   ||||     | ||   ||| | |  ||  ||| | || || ||| |  |  || ||||  |||| | | | |||||  |||||||||||||||| || || ||||||||||||||||||||||| || ||||| |||
gtaagtcagctactccaacatgttgccatgcttcatgatacaatagccattg-tgcctaatgtcaactt--tttggcagTTCTAACCTATTACGACTGGCTTTGTCCAATGGTTATCAGTTGCACAGCTGGTTCACGTATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGG

upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 8
-----------------gtgagtttgcaaatctacaggctttact-tgaaaatcagatagtttcaggtgataaatttgagtttcgttttgt--agCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGG
                 ||   | || ||   | ||||    | | |||||   |  |   |||     ||  | ||   | | || |||   ||||| ||| ||||||||||||| ||||||||| |||||||  |||| ||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||
gtaagcaaactacattggtttttatgaaatggtgcaggtaaaattgtgaaagctacttttattcctaatatgcagtt---tcttgtcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164039919|gb|ES098096.1|ES098096
EST:     GTGGTCTCGGGTGCTATAGGATCATGTTCAGTTTTATTTGCCAAGTCACT                         CTCGAACTTGC
genomic: GTGGTCTCGGGTGCTATAGGATCATGTTCAGTTTTATTTGCCAAGTCACTgtgagtttgc ... cgttttgtagCTCGAACTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttacttgaaaatcagatagtttcaggtgataaatttgagtttcgttttgtagCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGG
                                          tttcgtttt  CT-rich tract
                               ataaatttgagttt  TA-rich tract