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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtcatgatactttggttactggcagaagcacattttataacagcattctctttatgttgggttctttgattgttaataatttctcatggtgtttttcagGTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCG

Basic information

species Arabidopsis thaliana
transcript AT3G19720.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19720.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------------------------------------------------ggtcatgatactttggttactggcagaagcacattttataacagcattctctttat--gttgggttctttgattgttaataatttctcatggtgtttttcagGTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCG
                                                                                   |   |  |||  || |   ||   |    || | ||     ||| |  |||   | ||  |  |  |||||| ||||  || ||   || |||  |||| || |||||||| |||||||||    | ||||||||||||||||| ||||||||||| |||||  |||| ||||| ||||| 
gtaagccatctagatatttgcattgtacagtcaagcgtatggtagatatttttgtatgttattcttatttttcagccgtatgaactgtttttttctttcattcatttgttgtttatttatttctattattgttacaggctgtttggtcagattgtgaataggttttc--tgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctctttatgttgggttctttgattgttaataatttctcatggtgtttttcagGTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCG
                          tgttaat  putative branch site (score: 3)
                                             tgtttttc  putative PPT
                 ttctttgattgttaat  TA-rich tract