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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattggaagattcataacgatatgtagattttggattttgtttacagtctttagattttgatcgtgacaattattaacttgcagTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G18080.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125163758|gb|EL190528.1|EL190528
EST:     AACCTAAGGATTTTGGGTTTATCAACAAGATTGGAATGTGGAATTTGGCT                         TTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
genomic: AACCTAAGGA-TTTGGG-TTATCAACAAGATTGGAATGTGGAATTTGGCTgtaagttatt ... taacttgcagTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
EST: gi|125019244|gb|EL091513.1|EL091513
EST:     AATGTGGAATTTGGCT                         TTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
genomic: AATGTGGAATTTGGCTgtaagttatt ... taacttgcagTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
EST: gi|124877450|gb|EH956887.1|EH956887
EST:     CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCT                         TTGCTAAGTTGGGGAAGCCA
genomic: CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCTgtaagttatt ... taacttgcagTTGCTAAGTTGGGGAAGCCA
EST: gi|125089404|gb|EL147785.1|EL147785
EST:     CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCT                         TTGCTAAGTTGGGGAAG
genomic: CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCTgtaagttatt ... taacttgcagTTGCTAAGTTGGGGAAG
EST: gi|116477432|gb|EG520024.1|EG520024
EST:     CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCT                         TTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
genomic: CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCTgtaagttatt ... taacttgcagTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggattttgtttacagtctttagattttgatcgtgacaattattaacttgcagTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGG
                                          tattaac  putative branch site (score: 1)
                                     acaattattaactt  TA-rich tract