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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttactacagaacatgcatgtacttaatagctattatcttctgttgtgaagcatgtctgtagtctgcaatggagatctgacttgtcaggtttggtggattactatctttcaactttttcatttttattactttctttttcagATATACATCCTTATCTACAAGGAGGTTGCTCTTGCTTTAAAGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTAC

Basic information

species Arabidopsis thaliana
transcript AT3G16785.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 8
gtacttactacagaacatgcatgtacttaatagctattatcttctgttgtgaagcatgtctgtagtctgcaatggagatctgacttgtcaggtttggtggattactatctttcaactttttcatttttattactttctttttcagATATACATCCTTATCTACAAGGAGGTTGCTCTTGCTTTAAAGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTAC
                           || |  | |   |  || | | ||| | ||| |           |  | |||    | |||     ||| |  ||| | ||  |  |        ||||  ||   ||| |  | ||||| ||||| ||| ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    | ||||||| ||||||||||||||||| ||||| 
---------------------------tagttacaaaggtactcagctatgatgtatgcc-----------actgggataatgcatgttccaattgctttatttccattgtcaag-------atttacatggatttttaatgcagATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTAT

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 8
gtacttactacagaacatgcatgtacttaatagctattatcttctgttgtgaagcatgtctgtagtctgcaatggagatctgacttgtcaggtttggtggattactatctttcaactttttcatttttattactttcttttt-cagATATACATCCTTATCTACAAGGAGGTTGCTCTTGCTTTAAAGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTAC
                                        |  |||     | ||||||    | |     ||    || | | | |||| | ||  |  || |||   ||| ||  |    ||||  || | ||| ||  | ||||| ||||| ||| ||||||| ||||| ||||||||||| || || |||||||| ||||||||    | ||||||| ||||||||||||||||| ||||| 
--------------------------------------tgccactgggacaatgcatgttccaattgctttatttccatgtaagt-gtcaagatt--tacatgact---ttttaa--tgcagatttacatgaattttttaatgcagATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTAT

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 8
gtacttactacagaacatgcatgtacttaatagctattat-cttctgttgtgaagcatgtctgtagtctgcaatggagatctgacttgtcaggtttggtggattactatctttcaactttttcatttttattactttctttttcagATATACATCCTTATCTACAAGGAGGTTGCTCTTGCTTTAAAGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTAC
                               |   ||||| | |   || |      | ||||| |  |      | || ||   |||      | |  ||  | ||    || |  ||| ||    |||| |||        ||||| ||||| ||| ||||||| ||||||||||||||||| || ||||||||||| || || ||| | | ||||||| ||||||||||||||||| | ||||
-----------------------------gaaatcattattcctgcatttttttttctttctgttgattat----gggacctactttgatccactagaagggatgctggtgttaa--tttatc----ttatgactg-------cagATTTACATTCTTCTCTACAAAGAGGTTGCTCTTGCTTTGAAAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttggtggattactatctttcaactttttcatttttattactttctttttcagATATACATCCTTATCTACAAGGAGGTTGCTCTTGCTTTAAAGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTAC
                 tctttcaactttttca  CT-rich tract
                       aactttttcattttta  TA-rich tract