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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgttcaacctatatcccaaagttatcattatcaatctagttgttttagtctgagattgtgaggttttaatgtgattgtgtagGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTCAAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCT

Basic information

species Arabidopsis thaliana
transcript AT3G15650.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15650.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G43990.2 (Glycine max), 3'ss of exon 9
-----------------gtaactgttcaacctatatcccaaagttatcattatcaatctagttgttttagtctgagattgtgaggttttaatgtgattgtgtagGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTCAAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCT
                 ||     ||  |  | | |  || |    |  | |   ||| || |    ||||     | | |  |||||     ||  |||| ||||||||||| || |||||||||| ||| |||||||||||       ||| |    |||||  | || || || || ||    |||     | ||  |   
tagatgggtcaagttcagtttgctttagattttttttgcacatccttgttcaatgatc-agctaaagtagttgctcactttttggttt-gtcatg--tgtgcagGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAAGTGACATAATTAGTA

upper sequence: AT3G15650.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA15G01350.1 (Glycine max), 3'ss of exon 9
----------gtaactgttcaacctatatcccaaagttatcattatcaatctagttgttttagt--ctgagattgtgaggttttaatgtgattgtgtagGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTCAAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCT
           | |  | | ||   ||  | | |||| |||| |    ||| || |     |||  || |  || |  |||||     ||  |||| ||||||||||| || || ||||||| |||||||||||||||       |||||    |||||||| || || || |||       |   ||||    | |  
gtaatttttctttatagctgaaatcatcccactaagtgatcaatgatgatc-agctaaagcagttgctcactttttttggttt-gccatg--tgtgcagGCTTGGTCATTACACAGTTCCTAGAGAAATGGATGAGGTTTGCACTTGGCTTAGTTCAAGGCTGGGACTTGAAGGTATATAGGAGGATTTATTTTCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcaatctagttgttttagtctgagattgtgaggttttaatgtgattgtgtagGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTCAAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCT
                                    ttttaat  putative branch site (score: 3)
                                    ttttaatgt  TA-rich tract