Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgcattcctttcttcgattcttcgatcttttctctaatctcactaattttttcctgaatgatcttgaaaacagAAAAGATGGCAATTTATTAAATTCCGGGCCTGCACCTCCACCACCTCCTGGTACACCACCGATCAGTAAATCATCACCTACTCCGAAATCCGGGAACCGT

Basic information

species Arabidopsis thaliana
transcript AT3G14350.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125071244|gb|EL136361.1|EL136361
EST:     AATCGGTTCACAGGCTGGATCCCTGATTCTTTGAAAGGCATTAACTTGCA                         AAAAGATGGCAAT
genomic: AATCGGTTCACAGGCTGGATCCCTGATTCTTTGAAAGGCATTAACTTGCAgtaagtgttg ... ttgaaaacagAAAAGATGGCAAT
EST: gi|116468522|gb|EG511114.1|EG511114
EST:     AATCGGTTCACAGGCTGGATCCCTGATTCTTTGAAAGGCATTAACTTGCA                         AAAAGATGGCAATTTATTAAATTCCGGGCCTGCACCTCCACCACCTCCTGG
genomic: AATCGGTTCACAGGCTGGATCCCTGATTCTTTGAAAGGCATTAACTTGCAgtaagtgttg ... ttgaaaacagAAAAGATGGCAATTTATTAAATTCCGGGCCTGCACCTCCACCACCTCCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcgatcttttctctaatctcactaattttttcctgaatgatcttgaaaacagAAAAGATGGCAATTTATTAAATTCCGGGCCTGCACCTCCACCACCTCCTGGTACACCACCGATCAGTAAATCATCACCTACTCCGAAATCCGGGAACCGT
                      cactaat  putative branch site (score: 2)
                       actaatttttt  TA-rich tract