1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaactagaaaacaatttcagaaatctttttcattcagtatatatataacttgagtgtttctaatgtattaaagcttaacagGTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAATCTGCAACTGCAGAGTCAGCGAGCAAGGAATCTCCTGCAGCTGTTCAAACGTCCAGTGATGTTA
species | Arabidopsis thaliana |
transcript | AT3G13460.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCGACAGAAGACTATCTTGGAGAAGAAAGCCAAGCAAACCCAGAAACAG GTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAAEST: gi|125040402|gb|EL112671.1|EL112671
genomic: TTCGACAGAAGACTATCTTGGAGAAGAAAGCCAAGCAAACCCAGAAACAGgtaagaacta ... agcttaacagGTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAA
EST: TTCGACAGAAGACTATCTTGGAGAAGAAAGCCAAGCAAACCCAGAAACAG GTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAAT
genomic: TTCGACAGAAGACTATCTTGGAGAAGAAAGCCAAGCAAACCCAGAAACAGgtaagaacta ... agcttaacagGTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAAT
ttttcattcagtatatatataacttgagtgtttctaatgtattaaagcttaacagGTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAATCTGCAACTGCAGAGTCAGCGAGCAAGGAATCTCCTGCAGCTGTTCAAACGTCCAGTGATGTTA
ttctaat putative branch site (score: 2)
attcagtatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactagaaaacaatttcagaaatctttttcattcagtatatatataacttgagtgtttctaatgtattaaagcttaacagGTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAATCTGCAACTGCAGAGTCAGCGAGCAAGGAATCTCCTGCAGCTGTTCAAACGTCCAGTGATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT