Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgacagtttcatttcctatttcttgcttccagtttttgttagggtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaagGGTGATCTGTTAGAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCATATTTCGTCCCTG

Basic information

species Arabidopsis thaliana
transcript AT3G13070.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA02G46780.1 (Glycine max), 3'ss of exon 8
gtttgacagtttcatt--tcctatttcttgc-ttcca---gtttttgttagggtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaagGGTGATCTGTTAGAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCATATTTCGTCCCTG
||| |    ||| | |  || | ||| |||  || ||   | |||  |||    || | ||    |||    | ||     ||| |||| | ||||||||||||||||||||  || ||||||||||| | || || || ||||| || |||||||| ||||| || ||||
gttggcagattttactcatcatgtttattgagttacaagtgctttacttattaattatatcccccaatctcatagtttgcagaactataatctgtttgattttgaagGGTGAGTTGCTAGAAAGTACTACGGTTGGAGATATGGCTCACAAACCTGCTTATTTTGTACCTG

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------gtttgacagtttcatttcctatttcttgcttccagtttttgttagg--gtttctttctgtta------attgtgttgtagaatg---aaatatactgtgtttgattttgaagGGTGATCTGTTAGAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCATATTTCGTCCCTG
                                                     |  |||||  ||    | || ||||||      | || | |||  |   ||||||    |||      | | | |  |||  ||   || |||  | ||||||||||||||||| ||  |  |||||||| ||  |||||| || ||||| |||||||||||||| ||||| ||||
gttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaagGGGGAGATTCTAGAAAGTTCTATTGTGGGAGATATGGCTCATAAACCTGCATACTTCGTGCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaagGGTGATCTGTTAGAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCATATTTCGTCCCTG
                       tagaatgaaatata  TA-rich tract