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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgagcatttactagcttgattctatagtcgaatataccaaactcttctatatatactaatgatggtgttttgcagGCAATCAAAGCGGGTGAAGAAGGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGATTTTTCAAACTATCGTGGGAATTCTATGGGG

Basic information

species Arabidopsis thaliana
transcript AT3G09940.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075994|gb|DR371751.1|DR371751
EST:     GTGTTGAACACGCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAA                         GCAATCAAAGCGGGTGAAGAAGGGAAAACGATCCCAGATTACGATTATCTT
genomic: GTGTTGAACACGCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAAgtacgagcat ... tgttttgcagGCAATCAAAGCGGGTGAAGAAGGGAAAACGATCCCAGATTACGATTATCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatagtcgaatataccaaactcttctatatatactaatgatggtgttttgcagGCAATCAAAGCGGGTGAAGAAGGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGATTTTTCAAACTATCGTGGGAATTCTATGGGG
                                 tactaat  putative branch site (score: 1)
                        ttctatatatactaat  TA-rich tract