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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctctcatacgtttcgattatagttattcactctgaaaaaacttgtttaacgagacaaacatttgttctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGTGTGTGCTTGTGTCTTACTCTTCTTCTCTGA

Basic information

species Arabidopsis thaliana
transcript AT3G09740.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081762|gb|DR377521.1|DR377521
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|124902612|gb|EH976692.1|EH976692
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTAC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTAC
EST: gi|116431994|gb|EG474586.1|EG474586
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|163967177|gb|ES020414.1|ES020414
EST:     TGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATT
genomic: TGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATT
EST: gi|86084593|gb|DR380352.1|DR380352
EST:     SMTATTGTYYTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|116435937|gb|EG478529.1|EG478529
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|125076770|gb|EL139802.1|EL139802
EST:     TACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: TACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|164091292|gb|ES196168.1|ES196168
EST:     TTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGG
genomic: TTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGG
EST: gi|164134968|gb|EL996896.1|EL996896
EST:     ATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTCGCATACTTATACAA                         TGTACTGAAGTAAT
genomic: ATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCT-GCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattcactctgaaaaaacttgtttaacgagacaaacatttgttctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGTGTGTGCTTGTGTCTTACTCTTCTTCTCTGA
                      gtttaac  putative branch site (score: 3)
                                       tttgttctct  putative PPT
             aaaaaacttgtttaa  TA-rich tract