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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgagaacccaaatatttgtttaccaagataaacaatttgctcatgcctcacaagacagctgtttagaaaacaaaacttgaaaacaacaattgcagGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC

Basic information

species Arabidopsis thaliana
transcript AT3G06550.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 8
gtaagtgagaacccaaatatttgtttaccaagataaacaatttgctcatgcctcacaagacagctgtttagaaaacaaaacttgaaaacaacaattgcagGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC
||||||      |    ||    ||||   || |  | | |||    ||   |    ||  ||     |    ||   || ||    ||      |||||| || | ||||||  | |||||| | || || |  |||||||||||||||||||| |||||||| ||||| |||||||||||  | |||||| | |||||
gtaagttt---tctctgtaaacttttagtgagtttgatagtttatatatatatttttagtaagga---tgatcaatgtaattt----accttgtgtgcagGCTATACTGATCCATCTAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGC

upper sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 8
gtaagtgagaacccaaatattt--gtttaccaagataaaca-atttgctcatgcctcacaagacagctgtttagaaaacaaaacttgaaaacaacaattgcagGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC
|| ||| | |      ||||||   || ||||    || || |   | |||||| | ||  ||  | |  ||        ||||||| |    | | |  |      |||  |||| || ||| | || ||| | | |||||||||||||||||| || || || |||||||| |||||||||||||| || ||| |      
gttagtaacatgtatgatattttacttcaccattgaaagcacagcagatcatgc-taactggaaggtttcttt-------aaacttgcagGATATACTGACC-----CAA--ATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT------

upper sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtgagaacccaaatatttgtttaccaagataaacaatttgctcatgcct-cacaagacagctgtttagaaaacaaaacttgaaaacaacaatt-gcagGTTACAATGATCCCG------CAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC
                        | | ||| ||   |  ||   |  ||  |  || ||   |   || | |  || ||||    |   || |||| |||||||||| |||||| |      ||||||   || || |||  ||||||||||||||||||||||| || |||||||| |||||||||||||| || ||| |      
-----------------------gtaagcaatatg--cctttgcattttgtttatactagcttgactttgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgcctcacaagacagctgtttagaaaacaaaacttgaaaacaacaattgcagGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC
    gcctcac  putative branch site (score: 3)
                     tttagaaaacaaaa  TA-rich tract