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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcgtatctactgatggttaaaaatgtgattttaccctttctttaataatccttttgctttgtttttgttttgttttgtaacatcagGCACTCTACTGATCGTGAAGTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 7
gtatattcgtatctactgatggttaaaaatgtgattttaccctttctttaataatccttttgctttgtttttgttttg-ttttg-----taacatcagGCACTCTACTGATCGTGAAGTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAG
                 | | |||||             | | ||  ||||   |  || ||||  || ||   || | | |||     | |   |||||| |||||||| ||||| ||||| |||||||||||  |||||||| | ||||||||| |||| |||
-----------------gttagttaagcccaaacaaaccctcattagttaacggtt-ttatgctcagtgttaacttggatgttggtgactgattccagGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccctttctttaataatccttttgctttgtttttgttttgttttgtaacatcagGCACTCTACTGATCGTGAAGTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAG
                                           ttgtaac  putative branch site (score: 2)
         tttaataatcctttt  TA-rich tract