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gtttgtctctcccatttttcaaacatgacccttggtgataagtaaaaggctctcataacacaactaacccaactgaatgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTG
species | Arabidopsis thaliana |
transcript | AT3G05530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAG ATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCEST: gi|124857255|gb|EH941692.1|EH941692
genomic: AGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctct ... atgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGC
EST: ACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAG ATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTEST: gi|124734772|gb|EH826174.1|EH826174
genomic: ACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctct ... atgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTT
EST: AGATTGAGTTCCCACGCCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAG ATTCACTCAAGGAAGEST: gi|164146057|gb|ES101754.1|ES101754
genomic: AGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctct ... atgaatccagATTCACTCAAGGAAG
EST: AGATTGAGTTCCCANACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAG ATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGC
genomic: AGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctct ... atgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGC
ttggtgataagtaaaaggctctcataacacaactaacccaactgaatgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTG
aactaac putative branch site (score: 1)
ataagtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctctcccatttttcaaacatgacccttggtgataagtaaaaggctctcataacacaactaacccaactgaatgaatccagATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA