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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaatcaggtagcattatctgaaacttatgtaaacatcactcagtcgactttgtcaaagtttttgtttttctgtaacagATGGCCAAAGAAGGAATCCCTCTACCTCCAGACAGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTG

Basic information

species Arabidopsis thaliana
transcript AT3G04460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124797677|gb|EH887356.1|EH887356
EST:     TATCAGCTCCAACAGTGTACCCTCCACCTCCACCTCCTCCAGCCCCAAAG                         ATGGCCAAAGAAGGAAT
genomic: TATCAGCTCCAACAGTGTACCCTCCACCTCCACCTCCTCCAGCCCCAAAGgtaatcaatc ... tctgtaacagATGGCCAAAGAAGGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgtaaacatcactcagtcgactttgtcaaagtttttgtttttctgtaacagATGGCCAAAGAAGGAATCCCTCTACCTCCAGACAGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTG
                                   tttttgtttttctgt  CT-rich tract
                               aaagtttttgttttt  TA-rich tract