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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcaaaccttccctatgtgatgattgcacactaaaccgtagagatacaaaacttagagaagtttatgttcagtgttctctttctatgttgtggctgatgattaccttacacgtgtgttctccctgcagGACATTGTGATTCGAAACCTTGACTTTATTTTGACATTTTCTCCCCAATCTATTGCAAATACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGG

Basic information

species Arabidopsis thaliana
transcript AT3G03790.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03790.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 9
gtaatgcaaaccttccctatgtgatgattgcacactaaaccgtagagatacaaaacttagagaagtttatgttcagtgttctctttctatgttgtggctgatgattaccttacacgtgtgttctccctgcagGACATTGTGATTCGAAACCTTGACTTTATTTTGACATTTTCTCCCCAATCTATTGCAAATACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGG
                            || ||| |||    |    |||      ||       |||    |  | ||    |    ||||| ||       |    |  |      |  | | | ||||||||||||  ||||| ||||| |||| |||||| ||| | ||  | ||  ||||||||| | ||||||||||||||||||| ||||||||||||||  |||
----------------------------tgtacaataa-ttatttctatatggtggttcatcctttttcaacttggagtg---tcaaaatgttttgctcatcaagctacccatctcaataatgtgcatgcagGACATTGCTATTCGCAACCTGGACTATATTTTTACAGTCTCAGCACATGCTATTGCAAGTGCATCACCTGATGTTCTTGCTAATCTTGAGAAATTGTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctctttctatgttgtggctgatgattaccttacacgtgtgttctccctgcagGACATTGTGATTCGAAACCTTGACTTTATTTTGACATTTTCTCCCCAATCTATTGCAAATACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGG
                             accttac  putative branch site (score: 3)
                                         tgttctccct  putative PPT
      tttctat  TA-rich tract