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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagggcattgatgttgttaaatctgatggtatacttgaaaaacgctctcagctttcttgaataatcaacaactgtgtttttttgtttgttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCAAACCGGTTCAACCGTAGGAAATCCGGTTGGCAATAACCTGAACCAGAA

Basic information

species Arabidopsis thaliana
transcript AT3G02460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080576|gb|DR376333.1|DR376333
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|301501579|gb|HO207119.1|HO207119
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|19742875|gb|AU228228.1|AU228228
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATC-AG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|124857581|gb|EH942018.1|EH942018
EST:     CCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA
genomic: CCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctcagctttcttgaataatcaacaactgtgtttttttgtttgttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCAAACCGGTTCAACCGTAGGAAATCCGGTTGGCAATAACCTGAACCAGAA
                                 tttttttgtttgttc  CT-rich tract
                                 tttttttgtttgtt  TA-rich tract