1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaattaacataggacctcatcttcgtaaatttatctctgtatgccactgaaaatatgattgtgagtttgagattgtataaatttttgatgtaaagTAGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGAGAGATTCAACAGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGC
species | Arabidopsis thaliana |
transcript | AT3G01540.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAG TAGAAGCAGCAATEST: gi|11118348|gb|AB050574.1|AB050574
genomic: GGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAGgtaaaattaa ... tgatgtaaagTAGAAGCAGCAAT
EST: GGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAG TAGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGA
genomic: GGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAGgtaaaattaa ... tgatgtaaagTAGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGA
atgccactgaaaatatgattgtgagtttgagattgtataaatttttgatgtaaagTAGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGAGAGATTCAACAGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGC
ttttgat putative branch site (score: 4)
ttttt CT-rich tract
attgtataaatttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattaacataggacctcatcttcgtaaatttatctctgtatgccactgaaaatatgattgtgagtttgagattgtataaatttttgatgtaaagTAGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGAGAGATTCAACAGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGC
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