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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataagatttgttgcttttttgagatgtgtacctaaaaaaaaaaacaattgtgaggggaagagaatagtaacggaattgcgtatgcttctttcttttctacatttcgcagcaaaatattaaatcaacgtctaattatcttcttcaattttcctgtgattgaatgaagGCTTTTAGCGACAAAAGCAGAGACTATACACTTCCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCGGTGTCGGGTTCTGCACCACCAGCAGGTT

Basic information

species Arabidopsis thaliana
transcript AT3G01150.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075312|gb|DR371069.1|DR371069
EST:     ACTGTAAGCTTCGACTATCATACTCTCGTCATACTGATCTGAATGTTAAG                         GCTTTTAGCGACAAAAGCAGAGACTATACACTTCCTGATCTAAGCCTACTT
genomic: ACTGTAAGCTTCGACTATCATACTCTCGTCATACTGATCTGAATGTTAAGgtacataaga ... ttgaatgaagGCTTTTAGCGACAAAAGCAGAGACTATACACTTCCTGATCTAAGCCTACTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattaaatcaacgtctaattatcttcttcaattttcctgtgattgaatgaagGCTTTTAGCGACAAAAGCAGAGACTATACACTTCCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCGGTGTCGGGTTCTGCACCACCAGCAGGTT
               gtctaat  putative branch site (score: 3)
                  taattatctt  TA-rich tract