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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatttgtatccctggtattaaagtgtatgtgtcagctaaagcaacataatgtgtcagaaactcacactctttttatttgcgttcatgattgccagGTCTCTCTATTTGCTCTTTCGTTCTGGAGTTTTCACTTTGCGAGCTTGTGTGCTTTTGGCCTCCTTGCATATGTTGGTTACATTATTTATGCCTTCCCGT

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402648|gb|EG445240.1|EG445240
EST:     GAGCTGTGGTTAAGACTTTCAGTATTAATTTCTTCACATATGGGTTTCCG                         GTCTCTCTATTTGCTCTTTCGTTCTG
genomic: GAGCTGTGTTTAAGACTTTCAGTATTAATTTCTTCACATATGGTTTTCCGgtatatattt ... tgattgccagGTCTCTCTATTTGCTCTTTCGTTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacataatgtgtcagaaactcacactctttttatttgcgttcatgattgccagGTCTCTCTATTTGCTCTTTCGTTCTGGAGTTTTCACTTTGCGAGCTTGTGTGCTTTTGGCCTCCTTGCATATGTTGGTTACATTATTTATGCCTTCCCGT
                  aactcac  putative branch site (score: 2)
                           tctttttattt  TA-rich tract