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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctcaaaaccctttacaaacattgaagatcttttcatgatctttttggtgataaattatgcagTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAACGCT

Basic information

species Arabidopsis thaliana
transcript AT2G47600.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47600.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G126601_T01 (Zea mays), 3'ss of exon 8
--------gtaaaaatctcaaa-accctttacaaacattgaagatcttttcatgatctttttggtgataaattat----gcagTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAACGCT
         |   | | |||     | | |    |  |    |||||      ||      ||   | |     |    ||||||||||||||||||| ||||| || ||||| ||||| ||| ||||  | ||||| ||||||| ||| |  ||| | || || || |||||||| || |||
gtttgttcctgccattttcatttgtcatgtttccatttcctggatctggagccgaataagctgacaaaattcccttgttgcagTAACTCGGTGAACATATATGTTGGCATTGGTGTTCCATGGTTGATTGATACAGTGTACAACTTCTTCGTTTACCGGGAACCATTGTACATAGATAATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478404|gb|EG520996.1|EG520996
EST:     AGAGCGACAACTAACCGCAGATTCAGCTATTGCAAACATCACCTGCAG                         TAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACAC
genomic: AGAGCGACAACTAACCGCAGATTCAGCTATTGCAAACATCACCTGCAGgtaaaaatct ... aattatgcagTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACAC
EST: gi|116478403|gb|EG520995.1|EG520995
EST:     AGAGCGACAACTAACCGCAGATTCAGCTATTGCAAACATCACCTGCAG                         TAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACAC
genomic: AGAGCGACAACTAACCGCAGATTCAGCTATTGCAAACATCACCTGCAGgtaaaaatct ... aattatgcagTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttacaaacattgaagatcttttcatgatctttttggtgataaattatgcagTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCGTGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAACGCT
                                        tgataaattat  TA-rich tract