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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttctcactttgttgatattcacaggcaaattttccattagacaagactcgagcatcttcaaactaatttattatgttctgtttcataccctcagTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCTTGGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G46930.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46930.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 8
gtaaatttctcactttgttgatattcacaggcaaattttccattagacaagactcgagcatcttcaaactaatttattatgttctgtttcataccctcagTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCTTGGCAG
||||  ||||  |||   |    || |     |     |  ||  ||       |||| |   | |   |||   || |  ||   || |     | ||||||||||| ||  |||||||| |      ||||||||||||| | ||||||||||||||||| ||||| || ||||||
gtaacattctgccttctcttgattttattta-atcccatgaatcggattttgtacgagaaa--tgatgttaaacaatgagatttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaagactcgagcatcttcaaactaatttattatgttctgtttcataccctcagTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCTTGGCAG
                     aactaat  putative branch site (score: 2)
                                              taccctc  putative PPT
              atcttcaaactaattt  TA-rich tract